If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ), 'gf_id' => 'HOM05D000966', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000966' ), 'data_identifier' => 'HOM05D000966', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000966', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '619', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24700' => 'bna', 'A05p04260' => 'bna', 'A07p24910' => 'bna', 'A07p42370' => 'bna', 'A07p42380' => 'bna', 'A07p42840' => 'bna', 'A08p19050' => 'bna', 'A09p52300' => 'bna', 'Aa31LG1G25820' => 'aar', 'Aa31LG2G19520' => 'aar', 'Aa31LG4G6790' => 'aar', 'Aa31LG4G7310' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2240' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5298' => 'aag', 'Actinidia15211' => 'ach', 'Actinidia17776' => 'ach', 'Actinidia18381' => 'ach', 'Actinidia21275' => 'ach', 'Actinidia24962' => 'ach', 'Actinidia29993' => 'ach', 'Actinidia33296' => 'ach', 'Actinidia33610' => 'ach', 'Ah.02g124940' => 'amhyb', 'Ah.05g169110' => 'amhyb', 'Ah.07g203380' => 'amhyb', 'Ah.09g228570' => 'amhyb', 'AL2G36860' => 'aly', 'AL2G37500' => 'aly', 'AL4G43030' => 'aly', 'AL5G42140' => 'aly', 'AL7G21250' => 'aly', 'Aqoxy2G01948' => 'aox', 'Aqoxy4G02511' => 'aox', 'Aqoxy5G02416' => 'aox', 'Aqoxy7G00169' => 'aox', 'Aqoxy7G03278' => 'aox', 'Aqoxy88s003' => 'aox', 'Aqoxy88s008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6PY5RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HUSC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQLE9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9MQRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1HFN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNY9JW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7B6WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCNC0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XD33H1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z22D2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2GQ5K' => 'arhy', 'AT1G76710' => 'ath', 'AT1G77300' => 'ath', 'AT2G44150' => 'ath', 'AT3G59960' => 'ath', 'AT4G30860' => 'ath', 'ATR0580G159' => 'atr', 'ATR0584G046' => 'atr', 'ATR0584G286' => 'atr', 'ATR1156G014' => 'atr', 'Atru.chr13.1574' => 'acertr', 'Atru.chr13.2052' => 'acertr', 'Atru.chr3.2024' => 'acertr', 'Atru.chr3.2622' => 'acertr', 'Atru.chr7.388' => 'acertr', 'AUR62007714' => 'cqu', 'AUR62013429' => 'cqu', 'AUR62020807' => 'cqu', 'AUR62025379' => 'cqu', 'AUR62026672' => 'cqu', 'AUR62027898' => 'cqu', 'AUR62028372' => 'cqu', 'AUR62040579' => 'cqu', 'BcaB01g03328' => 'bca', 'BcaB02g07436' => 'bca', 'BcaB02g07438' => 'bca', 'BcaB03g12663' => 'bca', 'BcaB05g25032' => 'bca', 'BcaB05g25036' => 'bca', 'BcaC01g01135' => 'bca', 'BcaC01g05184' => 'bca', 'BcaC02g10098' => 'bca', 'BcaC02g12334' => 'bca', 'BcaC03g15727' => 'bca', 'BcaC07g40401' => 'bca', 'BcaC07g40538' => 'bca', 'BcaC08g45016' => 'bca', 'BcaC08g47221' => 'bca', 'BcaC08g47620' => 'bca', 'BolC3t15292H' => 'bol', 'BolC3t21156H' => 'bol', 'BolC4t22137H' => 'bol', 'BolC4t24843H' => 'bol', 'BolC6t37811H' => 'bol', 'BolC6t40119H' => 'bol', 'BolC6t40164H' => 'bol', 'BolC8t51100H' => 'bol', 'BraA03t11676Z' => 'bra', 'BraA05t19411Z' => 'bra', 'BraA07t30133Z' => 'bra', 'BraA07t31764Z' => 'bra', 'BraA07t31805Z' => 'bra', 'BraA08t33866Z' => 'bra', 'BraA09t40659Z' => 'bra', 'C03p29440' => 'bna', 'C03p88480' => 'bna', 'C04p05040' => 'bna', 'C04p32800' => 'bna', 'C06p26480' => 'bna', 'C06p50930' => 'bna', 'C06p51460' => 'bna', 'C08p34960' => 'bna', 'CAN.G1190.17' => 'can', 'CAN.G140.47' => 'can', 'CAN.G192.13' => 'can', 'CAN.G286.5' => 'can', 'CAN.G36.26' => 'can', 'CAN.G531.16' => 'can', 'CAN.G555.11' => 'can', 'CAN.G572.45' => 'can', 'CAN.G575.17' => 'can', 'CAN.G716.14' => 'can', 'CANSAT11G0969' => 'cansat', 'CANSAT25G2222' => 'cansat', 'CANSAT25G2301' => 'cansat', 'CANSAT56G0447' => 'cansat', 'CANSAT64G2451' => 'cansat', 'CANSAT78G1917' => 'cansat', 'CANSAT80G2061' => 'cansat', 'CARHR070260' => 'chi', 'CARHR070780' => 'chi', 'CARHR139320' => 'chi', 'CARHR170280' => 'chi', 'CARHR238730' => 'chi', 'Carub.0002s2362' => 'cru', 'Carub.0002s2418' => 'cru', 'Carub.0004s2670' => 'cru', 'Carub.0005s2669' => 'cru', 'Carub.0007s0969' => 'cru', 'Ca_10671_v3' => 'car', 'Ca_16610_v3' => 'car', 'Ca_25247_v3' => 'car', 'CBR_g12731' => 'cbr', 'CBR_g41442' => 'cbr', 'CBR_g50033' => 'cbr', 'CBR_g52455' => 'cbr', 'Cc00_g32880' => 'ccan', 'Cc01_g02760' => 'ccan', 'Cc03_g11990' => 'ccan', 'Cc03_g12000' => 'ccan', 'Cc03_g12010' => 'ccan', 'Cc03_g13120' => 'ccan', 'Cc06_g14440' => 'ccan', 'Cc10_g13740' => 'ccan', 'CDE02G0098' => 'cde', 'CDE02G1847' => 'cde', 'CDE08G1614' => 'cde', 'CDE11G0443' => 'cde', 'CDE12G0409' => 'cde', 'Cfa018294' => 'cfa', 'Cfa018425' => 'cfa', 'Cfa020771' => 'cfa', 'Cfa024057' => 'cfa', 'Cfa024501' => 'cfa', 'Ciclev10000005m.g' => 'ccl', 'Ciclev10000952m.g' => 'ccl', 'Ciclev10008144m.g' => 'ccl', 'Ciclev10024071m.g' => 'ccl', 'CiPaw.01G203800' => 'cil', 'CiPaw.02G126100' => 'cil', 'CiPaw.15G013800' => 'cil', 'CiPaw.15G031200' => 'cil', 'CiPaw.15G163700' => 'cil', 'CiPaw.16G022600' => 'cil', 'ClCG06G008430' => 'cla', 'ClCG06G008440' => 'cla', 'ClCG06G012700' => 'cla', 'ClCG08G006030' => 'cla', 'ClCG08G008820' => 'cla', 'COL.COLO4_13799' => 'col', 'COL.COLO4_19513' => 'col', 'COL.COLO4_35487' => 'col', 'COL.COLO4_36568' => 'col', 'COL.COLO4_36773' => 'col', 'Cpa.g.sc199.8' => 'cpa', 'Cpa.g.sc199.9' => 'cpa', 'Cpa.g.sc26.315' => 'cpa', 'Cpa.g.sc49.86' => 'cpa', 'Cpa.g.sc9.234' => 'cpa', 'Cre07.g322450' => 'cre', 'Cre09.g392542' => 'cre', 'CsaV3_1G029250' => 'csa', 'CsaV3_2G011820' => 'csa', 'CsaV3_6G005070' => 'csa', 'CsaV3_6G034050' => 'csa', 'CSS0008046' => 'camsi', 'CSS0012830' => 'camsi', 'CSS0013550' => 'camsi', 'CSS0026263' => 'camsi', 'CSS0034760' => 'camsi', 'CSS0037288' => 'camsi', 'CSS0040268' => 'camsi', 'CSS0042459' => 'camsi', 'DCAR_001155' => 'dca', 'DCAR_005463' => 'dca', 'DCAR_014368' => 'dca', 'DCAR_014798' => 'dca', 'DCAR_016658' => 'dca', 'DCAR_016659' => 'dca', 'DCAR_017925' => 'dca', 'DCAR_017926' => 'dca', 'DCAR_017928' => 'dca', 'Dinv14693' => 'din', 'Dinv24734' => 'din', 'Dinv27269' => 'din', 'Dinv41333' => 'din', 'Duzib041G0231' => 'dzi', 'Duzib093G1496' => 'dzi', 'Duzib116G0132' => 'dzi', 'Duzib168G1082' => 'dzi', 'Duzib187G0743' => 'dzi', 'Duzib235G0520' => 'dzi', 'ECA233G6088' => 'eca', 'ECA234G4770' => 'eca', 'ECA238G3392' => 'eca', 'ECA240G2206' => 'eca', 'ECA240G3489' => 'eca', 'ECA246G3937' => 'eca', 'EL10Ac1g01359' => 'bvu', 'EL10Ac1g01592' => 'bvu', 'EL10Ac1g01851' => 'bvu', 'EL10Ac3g06194' => 'bvu', 'EL10Ac4g08520' => 'bvu', 'EL10Ac5g11475' => 'bvu', 'EL10Ac7g17540' => 'bvu', 'EL10Ac8g18900' => 'bvu', 'Eucgr.A00397' => 'egr', 'Eucgr.C01233' => 'egr', 'Eucgr.F02689' => 'egr', 'Eucgr.F03851' => 'egr', 'FAN01G0621' => 'fan', 'FAN03G0153' => 'fan', 'FAN07G0432' => 'fan', 'FAN12G1904' => 'fan', 'FAN15G1688' => 'fan', 'FAN17G0011' => 'fan', 'FAN19G1931' => 'fan', 'FAN19G3044' => 'fan', 'FAN20G2668' => 'fan', 'FAN23G0724' => 'fan', 'FAN23G2698' => 'fan', 'FAN24G3136' => 'fan', 'FAN26G0147' => 'fan', 'FAN26G3290' => 'fan', 'FAN27G3367' => 'fan', 'FAN28G0914' => 'fan', 'FAN28G1813' => 'fan', 'FvH4_1g00050' => 'fve', 'FvH4_1g30000' => 'fve', 'FvH4_2g27880' => 'fve', 'FvH4_4g08820' => 'fve', 'Glyma.01G064800' => 'gma', 'Glyma.04G245400' => 'gma', 'Glyma.06G117700' => 'gma', 'Glyma.06G223300' => 'gma', 'Glyma.09G156500' => 'gma', 'Glyma.10G222800' => 'gma', 'Glyma.12G000226' => 'gma', 'Glyma.16G207200' => 'gma', 'Glyma.18G302200' => 'gma', 'Glyma.20G168900' => 'gma', 'Gohir.A02G070700' => 'ghi', 'Gohir.A05G238000' => 'ghi', 'Gohir.A06G111200' => 'ghi', 'Gohir.A06G181200' => 'ghi', 'Gohir.A13G206300' => 'ghi', 'Gohir.D02G077900' => 'ghi', 'Gohir.D05G240000' => 'ghi', 'Gohir.D06G115100' => 'ghi', 'Gohir.D06G188000' => 'ghi', 'Gohir.D13G210900' => 'ghi', 'Gorai.005G087500' => 'gra', 'Gorai.009G248900' => 'gra', 'Gorai.010G131600' => 'gra', 'Gorai.010G220300' => 'gra', 'Gorai.013G240900' => 'gra', 'GSVIVG01008805001' => 'vvi', 'GSVIVG01017489001' => 'vvi', 'GSVIVG01017491001' => 'vvi', 'GSVIVG01023699001' => 'vvi', 'GSVIVG01024266001' => 'vvi', 'GSVIVG01034571001' => 'vvi', 'GSVIVG01034572001' => 'vvi', 'HanXRQChr03g0066001' => 'han', 'HanXRQChr05g0129951' => 'han', 'HanXRQChr05g0149781' => 'han', 'HanXRQChr08g0226091' => 'han', 'HanXRQChr12g0357821' => 'han', 'HanXRQChr12g0357931' => 'han', 'HanXRQChr12g0357941' => 'han', 'HanXRQChr14g0445711' => 'han', 'Haze_11092' => 'cav', 'Haze_17638' => 'cav', 'Haze_17793' => 'cav', 'Haze_19110' => 'cav', 'Haze_26762' => 'cav', 'Haze_26962' => 'cav', 'Hma1.2p1_0028F.1_g017810' => 'hma', 'Hma1.2p1_0081F.1_g042500' => 'hma', 'Hma1.2p1_0880F.1_g231805' => 'hma', 'Hma1.2p1_0880F.1_g231810' => 'hma', 'Hma1.2p1_1372F.1_g278670' => 'hma', 'Hma1.2p1_2565F.1_g324500' => 'hma', 'HPP92_009293' => 'vpl', 'HPP92_009295' => 'vpl', 'HPP92_010350' => 'vpl', 'HPP92_010351' => 'vpl', 'HPP92_015145' => 'vpl', 'HPP92_016112' => 'vpl', 'Hund12044' => 'sun', 'Hund25522' => 'sun', 'Hund26426' => 'sun', 'Hund26681' => 'sun', 'Hund26773' => 'sun', 'Lalb_Chr01g0008661' => 'lal', 'Lalb_Chr02g0141501' => 'lal', 'Lalb_Chr03g0033291' => 'lal', 'Lalb_Chr08g0241051' => 'lal', 'Lalb_Chr08g0241061' => 'lal', 'Lalb_Chr11g0066181' => 'lal', 'Lalb_Chr11g0072461' => 'lal', 'Lalb_Chr19g0131391' => 'lal', 'Lalb_Chr23g0271181' => 'lal', 'Lj1g0026196' => 'lja', 'Lj2A51G60' => 'lonja', 'Lj2C51T7' => 'lonja', 'Lj2g0013697' => 'lja', 'Lj4C702T3' => 'lonja', 'Lj5g0028132' => 'lja', 'Lj6g0021714' => 'lja', 'Lj7A351G47' => 'lonja', 'Lj7P351T22' => 'lonja', 'Lj9C723G5' => 'lonja', 'Lsat_1_v5_gn_2_67221' => 'lsa', 'Lsat_1_v5_gn_5_188121' => 'lsa', 'Lsat_1_v5_gn_6_110300' => 'lsa', 'Lsat_1_v5_gn_7_50901' => 'lsa', 'Lsat_1_v5_gn_8_521' => 'lsa', 'Manes.01G008900' => 'mes', 'Manes.02G168600' => 'mes', 'Manes.12G141700' => 'mes', 'Manes.14G113800' => 'mes', 'Manes.18G082550' => 'mes', 'Mapoly0005s0005' => 'mpo', 'Mapoly0009s0182' => 'mpo', 'Mapoly0036s0043' => 'mpo', 'Mapoly0045s0061' => 'mpo', 'Mapoly0192s0005' => 'mpo', 'MBI03_g13487_MAGBIO' => 'mbi', 'MBI03_g31889_MAGBIO' => 'mbi', 'MBI03_g31890_MAGBIO' => 'mbi', 'MBI03_g31891_MAGBIO' => 'mbi', 'MBI03_g31892_MAGBIO' => 'mbi', 'MBI03_g31893_MAGBIO' => 'mbi', 'MBI03_g39656_MAGBIO' => 'mbi', 'MBI15_g07483_MAGBIO' => 'mbi', 'MCO05G405' => 'mco', 'MCO06G115' => 'mco', 'MCO16G169' => 'mco', 'MD05G1031300' => 'mdo', 'MD05G1031500' => 'mdo', 'MD08G1159600' => 'mdo', 'MD10G1033000' => 'mdo', 'MD10G1033100' => 'mdo', 'MD15G1133700' => 'mdo', 'MD15G1141800' => 'mdo', 'MD16G1258900' => 'mdo', 'Medtr0071s0100' => 'mtr', 'Medtr1g098000' => 'mtr', 'Medtr1g098030' => 'mtr', 'Medtr1g098370' => 'mtr', 'Medtr3g088625' => 'mtr', 'Medtr6g059310' => 'mtr', 'MELO3C008329.2' => 'cme', 'MELO3C008475.2' => 'cme', 'MELO3C010193.2' => 'cme', 'MELO3C027654.2' => 'cme', 'MELO3C031134.2' => 'cme', 'Migut.D00537' => 'egut', 'Migut.J01397' => 'egut', 'Migut.N02271' => 'egut', 'Migut.N03097' => 'egut', 'Migut.N03259' => 'egut', 'MSTRG.1411' => 'ama', 'MSTRG.17555' => 'ama', 'MSTRG.22010' => 'ama', 'MSTRG.6166' => 'ama', 'MSTRG.6167' => 'ama', 'Nitab4.5_0000065g0220' => 'nta', 'Nitab4.5_0000317g0220' => 'nta', 'Nitab4.5_0000418g0030' => 'nta', 'Nitab4.5_0000617g0300' => 'nta', 'Nitab4.5_0000949g0070' => 'nta', 'Nitab4.5_0001036g0020' => 'nta', 'Nitab4.5_0002809g0080' => 'nta', 'Nitab4.5_0003555g0070' => 'nta', 'Nitab4.5_0003978g0030' => 'nta', 'Nitab4.5_0005132g0040' => 'nta', 'Nitab4.5_0005166g0010' => 'nta', 'Nn1g08953' => 'nnu', 'Nn3g18699' => 'nnu', 'Nn5g28439' => 'nnu', 'Nn7g37418' => 'nnu', 'Nn8g40137' => 'nnu', 'Oeu003761.1' => 'oeu', 'Oeu010275.1' => 'oeu', 'Oeu015303.1' => 'oeu', 'Oeu020493.1' => 'oeu', 'Oeu026372.2' => 'oeu', 'Oeu038859.3' => 'oeu', 'Oeu040396.1' => 'oeu', 'Oeu040397.2' => 'oeu', 'Oeu045562.1' => 'oeu', 'Oeu046516.1' => 'oeu', 'Oeu056130.2' => 'oeu', 'Os02g0553802' => 'osa', 'Os02g0554000' => 'osa', 'Os02g0611300' => 'osa', 'Os04g0429100' => 'osa', 'Os09g0307800' => 'osa', 'Peaxi162Scf00038g00615' => 'pax', 'Peaxi162Scf00062g01919' => 'pax', 'Peaxi162Scf00062g01920' => 'pax', 'Peaxi162Scf00066g00223' => 'pax', 'Peaxi162Scf00088g00919' => 'pax', 'Peaxi162Scf00441g00624' => 'pax', 'Peaxi162Scf00591g00715' => 'pax', 'Peaxi162Scf01038g00145' => 'pax', 'PGR042G2231' => 'pgr', 'PGR042G2517' => 'pgr', 'PGR042G2706' => 'pgr', 'PGR102G3031' => 'pgr', 'PGSC0003DMG400004289' => 'stu', 'PGSC0003DMG400010972' => 'stu', 'PGSC0003DMG400010980' => 'stu', 'PGSC0003DMG400022981' => 'stu', 'PGSC0003DMG400022994' => 'stu', 'PGSC0003DMG400035778' => 'stu', 'PGSC0003DMG401011157' => 'stu', 'PGSC0003DMG401025314' => 'stu', 'PGSC0003DMG402011157' => 'stu', 'PGSC0003DMG402025314' => 'stu', 'Phvul.001G083533' => 'pvu', 'Phvul.001G083666' => 'pvu', 'Phvul.004G131700' => 'pvu', 'Phvul.007G082400' => 'pvu', 'Phvul.009G130100' => 'pvu', 'Phvul.009G195400' => 'pvu', 'Potri.002G079100' => 'ptr', 'Potri.005G182100' => 'ptr', 'Potri.005G195400' => 'ptr', 'Potri.007G147200' => 'ptr', 'Potri.017G000400' => 'ptr', 'Potri.018G102100' => 'ptr', 'Pp3c1_33770' => 'ppa', 'Pp3c26_12150' => 'ppa', 'Pp3c2_12540' => 'ppa', 'Pp3c2_35860' => 'ppa', 'Pp3c4_29810' => 'ppa', 'PRCOL_00004438' => 'pco', 'PRCOL_00006742' => 'pco', 'Prupe.1G042700' => 'ppe', 'Prupe.1G101500' => 'ppe', 'Prupe.1G489300' => 'ppe', 'Prupe.4G272200' => 'ppe', 'Prupe.7G271600' => 'ppe', 'Prupe.8G017300' => 'ppe', 'Prupe.8G038500' => 'ppe', 'Psat1g023240' => 'psa', 'Psat1g113080' => 'psa', 'Psat1g148080' => 'psa', 'Psat5g084600' => 'psa', 'Psat6g191160' => 'psa', 'PSO017G4997' => 'pso', 'PSO063G2137' => 'pso', 'PSO170G0768' => 'pso', 'PSO170G5191' => 'pso', 'PSO675G5084' => 'pso', 'PSO700G0340' => 'pso', 'PSO732G0762' => 'pso', 'PSO782G3854' => 'pso', 'QL02p038471' => 'qlo', 'QL02p094348' => 'qlo', 'QL09p032370' => 'qlo', 'QL09p032394' => 'qlo', 'QL10p065188' => 'qlo', 'RcHm_v2.0_Chr1g0329491' => 'rch', 'RcHm_v2.0_Chr2g0084271' => 'rch', 'RcHm_v2.0_Chr4g0405361' => 'rch', 'RcHm_v2.0_Chr6g0296741' => 'rch', 'Rhsim01G0021300' => 'rsi', 'Rhsim06G0088400' => 'rsi', 'Rhsim06G0128000' => 'rsi', 'Rhsim09G0001000' => 'rsi', 'Rhsim09G0001100' => 'rsi', 'Sabra05G0138100' => 'sbr', 'Sabra05G0148900' => 'sbr', 'Sabra17G0005300' => 'sbr', 'Sabra18G0087600' => 'sbr', 'Sabra18G0087800' => 'sbr', 'SalBow1G2478' => 'sbo', 'SalBow2G0813' => 'sbo', 'SalBow6G0098' => 'sbo', 'SalBow7G0355' => 'sbo', 'SalBow7G2771' => 'sbo', 'Sc14g0001010' => 'sci', 'Sc20g0003630' => 'sci', 'Sc25g0002250' => 'sci', 'Sc26g0002860' => 'sci', 'Sed0004584' => 'sed', 'Sed0005530' => 'sed', 'Sed0009206' => 'sed', 'Sed0009464' => 'sed', 'Sed0011292' => 'sed', 'SEGI_04625' => 'sgi', 'SEGI_09567' => 'sgi', 'SEGI_10885' => 'sgi', 'SEGI_18174' => 'sgi', 'SEGI_19462' => 'sgi', 'SEGI_23432' => 'sgi', 'SEGI_26212' => 'sgi', 'SEGI_29086' => 'sgi', 'SGA_v2.0_scaffold25G11140' => 'sas', 'SGA_v2.0_scaffold265G46072' => 'sas', 'SGA_v2.0_scaffold28G11969' => 'sas', 'SGA_v2.0_scaffold42G16135' => 'sas', 'SHI02830' => 'shi', 'SHI09082' => 'shi', 'SHI09224' => 'shi', 'SHI09225' => 'shi', 'SHI09228' => 'shi', 'SHI09229' => 'shi', 'SHI09230' => 'shi', 'SHI09231' => 'shi', 'SMO196G0091' => 'smo', 'SMO203G0170' => 'smo', 'Solyc01g006220.3' => 'sly', 'Solyc04g024600.1' => 'sly', 'Solyc04g057880.3' => 'sly', 'Solyc06g059960.4' => 'sly', 'Solyc07g006050.3' => 'sly', 'Solyc07g006060.3' => 'sly', 'Solyc07g008460.3' => 'sly', 'Solyc07g008580.3' => 'sly', 'Solyc09g059997.1' => 'sly', 'Solyc12g100290.3' => 'sly', 'Sopen01g002220' => 'spe', 'Sopen04g025730' => 'spe', 'Sopen06g020060' => 'spe', 'Sopen07g002180' => 'spe', 'Sopen07g004390' => 'spe', 'Sopen07g004520' => 'spe', 'Sopen12g034910' => 'spe', 'Sp4g26230' => 'spa', 'Sp5g03220' => 'spa', 'Sp5g31860' => 'spa', 'Sp5g32470' => 'spa', 'Sp7g28740' => 'spa', 'TAR229G0001' => 'tar', 'TAR229G0005' => 'tar', 'TAR381G1161' => 'tar', 'TAR381G1211' => 'tar', 'TAR383G0488' => 'tar', 'TAR622G0056' => 'tar', 'TAR625G0972' => 'tar', 'THA.LOC104804421' => 'tha', 'THA.LOC104809635' => 'tha', 'THA.LOC104810214' => 'tha', 'THA.LOC104812030' => 'tha', 'THA.LOC104812082' => 'tha', 'THA.LOC104817099' => 'tha', 'THA.LOC104819902' => 'tha', 'Thecc.06G000400' => 'tca', 'Thecc.08G133300' => 'tca', 'Thecc.08G157600' => 'tca', 'Thecc.09G154800' => 'tca', 'Thhalv10001516m.g' => 'esa', 'Thhalv10006478m.g' => 'esa', 'Thhalv10017998m.g' => 'esa', 'Thhalv10018466m.g' => 'esa', 'Thhalv10025007m.g' => 'esa', 'TPR.G14496' => 'tpr', 'TPR.G17050' => 'tpr', 'TPR.G21850' => 'tpr', 'TPR.G5816' => 'tpr', 'TWI32G0333' => 'twi', 'TWI32G0919' => 'twi', 'TWI34G0436' => 'twi', 'TWI34G1216' => 'twi', 'TWI34G1291' => 'twi', 'TWI60G1172' => 'twi', 'unitig_0.g2115' => 'ugi', 'unitig_18.g30053' => 'ugi', 'unitig_747.g21497' => 'ugi', 'unitig_747.g21498' => 'ugi', 'unitig_8.g4809' => 'ugi', 'unitig_85.g27280' => 'ugi', 'vmacro00736' => 'vma', 'vmacro13070' => 'vma', 'vmacro17763' => 'vma', 'VMungo0464G1802' => 'vmu', 'VMungo0720G0673' => 'vmu', 'VMungo1309G1550' => 'vmu', 'VMungo1309G2033' => 'vmu', 'VMungo1309G2426' => 'vmu', 'Zm00001eb041060' => 'zma', 'Zm00001eb082920' => 'zma', 'Zm00001eb097830' => 'zma', 'Zm00001eb184480' => 'zma', 'Zm00001eb243610' => 'zma', 'Zm00001eb309540' => 'zma' ) $gf_id = 'HOM05D000966' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000966' ) $data_identifier = 'HOM05D000966' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 11, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 4, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 6, 'bvu' => (int) 8, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 10, 'gra' => (int) 5, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb309540' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1